SMAL MNA files and statistics

Full MNA

SMAL node alignment (labeled)

  • Total scaffold nodes: 1150, scaffold nodes with correspondences: 1135 (98.70%), total aligned nodes (NAs): 5496
SMAL edge alignment (conserved interactions) (labeled)
  • Total scaffold edges: 1305, scaffold edges with conserved interactions: 670 (51.34%), total conserved interactions (EAs): 1520

Derivatives for different levels of conservation

  • Scaffold nodes with alignment in at least 1 other distinct species: 1135 (98.70%) node alignment file
  • Scaffold nodes with alignment in at least 2 other distinct species: 1058 (92.00%) node alignment file
  • Scaffold nodes with alignment in at least 3 other distinct species: 833 (72.43%) node alignment file
  • Scaffold edges conserved in at least 1 other distinct species (EA-2): 652 (49.96%) edge alignment file
  • Scaffold edges conserved in at least 2 other distinct species (EA-3): 204 (15.63%) edge alignment file
  • Scaffold edges conserved in at least 3 other distinct species (EA-4): 33 (2.53%) edge alignment file

Visualization and external processing

View in cytoscape.js canvas online
Download .sif file

MNA creation log

Additional information:

  • PPIN "scaffold" contained 1305 PPI-, 0 comment- and 0 empty lines. Accepted 2610 and skipped 0 tokens.
  • Node Alignment "0" contained 897 alignment-, 0 comment- and 0 empty lines. Accepted 2800 and skipped 0 tokens.
  • PPIN "0" contained 25611 PPI-, 0 comment- and 0 empty lines. Accepted 51222 and skipped 0 tokens.
  • Node Alignment "1" contained 1042 alignment-, 0 comment- and 0 empty lines. Accepted 2883 and skipped 0 tokens.
  • PPIN "1" contained 34935 PPI-, 0 comment- and 0 empty lines. Accepted 69870 and skipped 0 tokens.
  • Node Alignment "2" contained 820 alignment-, 0 comment- and 0 empty lines. Accepted 2142 and skipped 0 tokens.
  • PPIN "2" contained 4372 PPI-, 0 comment- and 0 empty lines. Accepted 8744 and skipped 0 tokens.

Available modifications for this MNA

Modifications are disabled in this example.

Add one additional PNA to MNA

PNA: "Scaffold <- PPIN"PPIN optional label

Remove one existing PPIN from MNA

Non-scaffold networks in this MNA:

Delete the entire MNA from the server

Delete results directory. Final action. No further warning.